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PubMed & PMCID numbers

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PubMed & PMCID numbers
Author: Barb Library    Posted: Wed, 23 Apr 2008 19:37:11 -0400
Has anyone else run into a requirement to include a PMCID number in their citations (it is only for those articles that are available as free full text in PubMed)? I have EndNote X and if I export from the PMC section of PubMed's site it just flat out won't import into EndNote. If I locate the same citation in PubMed and export it, it does include a field with the PMC/PMCID number in the file, but only imports the PMID (a very different number) into EndNote. I noticed that there are recently updated import filters for PubMed so I installed them, tried again and still no PMCID. Does anyone know if EndNote 11 will import this field? Barb Anderson Barb Anderson Medical Librarian The Cleveland Clinic Alumni Library 9500 Euclid Ave. Cleveland, OH 44195 "andersb3" voice: 216-445-7347 fax: 216-444-0271 P Please consider the environment before printing this e-mail Cleveland Clinic is ranked one of the top hospitals in America by U.S. News & World Report (2007). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations. Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you.

RE: PubMed & PMCID numbers
Author: Lee A Vucovich    Posted: Mon, 28 Apr 2008 14:52:11 -0400
At the request of a UAB researcher, we have created instructions (much like Emily is working on at UW-Madison; however, we did not include the NIHMSID at his time) The pdf is posted here: http://www.uab.edu/lister/research/library/EndNote_PMCID.pdf For us, this is very much a work in progress, as we hope EndNote and PubMed will work together and a standardized solution will be provided. Any suggestions to improve these instructions (or problems you find with them) would be appreciated. Lee ****************************************************** Lee Vucovich, MS, MLS, AHIP Assistant Director for Reference Services Lister Hill Library of the Health Sciences University of Alabama at Birmingham (205)934-2230 fax: (205) 975-8313 "lvucovi" www.uab.edu/lister/ -----Original Message----- From: "listmaster" "mailto:listmaster" On Behalf Of Emily.Wixson "ewixson" Sent: Friday, April 25, 2008 10:39 AM To: "Endnote-Interest" Subject: Re: endnote-interest-digest V1 #2459 Dear Barb, RE: Subject: PubMed & PMCID numbers The new Endnote Pubmed filter imports PMID, PMCID, and NIHMSID all into the Accession number field. However because of the record structure, PMID claims the accession number field and leaves out the PMCID and NIHMSID. You must modify the import filter to either ignore the PMID, import the PMID into another field, or import PMCID and NIHMSID into different fields. Here at UW-Madison, we will soon publicizie a recommendation to relabel custom fields 6 and 7 into PMCID and NIHMSID respectively for the Journal Article field type. We will offer a modified PubMed filter that imports into these fields. We will also offer an NIH output style that formats these numbers in the proper style format for NIH progress reports and applications. I will post the URL for our instructions as soon as we set them up. If you would like the instructions, import filter, and output style sooner, contact me privately. Emily ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Emily N. Wixson, Senior Academic Librarian Chemistry Reference & Instruction UW-Madison "ewixson" Chemistry Library (608) 262-4423 2361 Chemistry Building 1101 University Avenue Madison, WI 53706

Re: Subject: PubMed & PMCID numbers
Author: Eric Frank    Posted: Wed, 30 Apr 2008 14:33:12 -0400
Emily sent me the import filter, connection file and NIH output style she developed to do this, as well as directions for relabeling the custom fields where these data are kept. Although she developed all this for a PC, I found that everything worked fine on a Mac (10.4) running EN X1. Now we need to convince more journals to post our articles directly to PubMed Central, rather than requiring us to deal with the copyright issues and submit them ourselves! Thanks, Emily! Eric Frank Tufts University School of Medicine Boston, MA 02111 > >Dear Barb, > >RE: Subject: PubMed & PMCID numbers > >The new Endnote Pubmed filter imports PMID, PMCID, and NIHMSID all into >the Accession number field. However because of the record structure, >PMID claims the accession number field and leaves out the PMCID and >NIHMSID. You must modify the import filter to either ignore the PMID, >import the PMID into another field, or import PMCID and NIHMSID into >different fields. > >Here at UW-Madison, we will soon publicizie a recommendation to >relabel custom fields 6 and 7 into PMCID and NIHMSID respectively for >the Journal Article field type. We will offer a modified PubMed filter >that imports into these fields. We will also offer an NIH output style >that formats these numbers in the proper style format for NIH progress >reports and applications. > >I will post the URL for our instructions as soon as we set them up. >If you would like the instructions, import filter, and output style >sooner, contact me privately. > >Emily > >~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >Emily N. Wixson, Senior Academic Librarian Chemistry Reference & >Instruction > >UW-Madison "ewixson" >Chemistry Library (608) 262-4423 >2361 Chemistry Building >1101 University Avenue >Madison, WI 53706

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